Nov 282013
 

The focus of GCP’s work – using genetic diversity and advanced plant science to improve crops for greater food security in the developing world, with a particular focus on drought-prone and harsh environments – seemed to resonate well in the research for development community during 2013, with a number of international events and publications turning the spotlight on drought and its effects on agriculture.

Field under drought duress

In our GCP corner, it all began in March, when GCP Director, Jean-Marcel Ribaut, began the year’s drought discourse with a talk entitled ‘Understanding drought tolerance to best breed for it: how far do we go?’ which he presented at the 49th Annual Illinois Corn Breeders’ School in Champaign, Illinois from 4–5 March.

Interdrought-presentation-JM-Ribaut-web-240

Keynote concentration on crops & drought worldwide: Jean-Marcel Ribaut’s presentation at InterDrought IV

Early September started with a ‘Harvest Festival’ of drought pickings, beginning with the InterDrought IV conference in Perth, Australia, from 2nd to 6th of the month. This conference, in addition to being partly sponsored by GCP, had Jean-Marcel presenting the keynote address, which explored the complexities of climate change on crop productivity, and delved deep into drought – a ‘complex and capricious’ creature, before considering the many facets of breeding for drought tolerance (see it all on SlideShare).

Late September continued the flavour of the month with the publication of a special issue of Nature tackling ‘Agriculture and Drought’. The article entitled ‘Plant Breeding: discovery in a dry spell’ by Michael Eisenstein poses the question: “Improved crops have helped farmers maintain yields in times of drought. But as climate change looms, will the gains keep coming?”  The special issue features, among others, past and present GCP scientists:

Crops coping with cracked earth

  • Arvind Kumar (IRRI) ponders the position of drought-tolerant rice and the effects of recent climate change;
  • François Tardieu (INRA, France) discusses maize yield in drought-prone conditions; he is the author of the chapter Assessing effects of water deficit in GCP’s publication Drought phenotyping in crops: from theory to practice  (an open-access book published in 2011);
  • Rajeev K Varshney (ICRISAT), GCP’s Theme Leader for Genomics until August this year, illustrates the effects of molecular breeding on legumes, in particular marker-assisted selection and quantitative trait loci for drought-tolerance related traits;
  • Jose Luis Araus Ortega (University of Barcelona, Spain), digs into the disparity between people with biotech and field experience in the area;  (he is co-author of the chapter Phenotyping maize for adaptation to drought in GCP’s phenotyping publication);
  • GCP itself is mentioned in the article as an example of a project which helps build local capacity in the developing world in order to maximise on advances in crop technology.
Richard Trethowan delivers on drought at the GCP GRM 2013

Richard Trethowan delivers on drought at the GCP GRM 2013

Just one day after the publication of the Agriculture & Drought special issue mentioned above, GCP’s General Research Meeting began, running from 27–30 September in Lisbon, Portugal. The focus of this year’s meeting was also on drought from day 1: setting the tone was the keynote address by GCP’s Product Delivery Coordinator for wheat, Richard Trethowan (University of Sydney, Australia) entitled Delivering drought tolerance to those who need it; from genetic resource to cultivar. More on GRM13

Drought phenotyping in crops: from theory to practice

The original GCP drought phenotyping publication

In keeping with the drought theme, we had on offer to GRM participants our 2011 open access book, Drought phenotyping in crops: from theory to practice. We also shared copies of chapters which had been republished by Frontiers. Republishing this work gave contributing authors an opportunity to refresh and update their findings, and to bring state-of-the-art research in phenotyping to the public once more via open access publishing, with each author moving at their own pace. Republished chapters will be compiled into an open-access e-book coming soon.

The closing chapter to this current chronicle on drought dialogues is a success story, by GCP Principal Investigators, Emmanuel Okogbenin (NRCRI, Nigeria), Chiedozie Egesi (NRCRI, Nigeria), and collaborator Martin Fregene (Donald Danforth Plant Science Center), which appears in a new FAO book, Biotechnologies at Work for Smallholders: Case Studies from Developing Countries in Crops, Livestock and Fish. The team’s GCP work on cassava is in chapter 2.4, entitled Molecular markers and tissue culture: technologies transcending continental barriers to add value and improve productivity of cassava in Africa, which describes the many hurdles they have successfully overcome to breed high-yield, disease-resistant, drought-tolerant cassava for breeding programmes in Nigeria. Going beyond drought, the chapter dwells on disease and other drawbacks – aspects also touched upon in this lively profile of Chiedozie Egesi. For in a narrative high and heavy on the devastation of drought and disease, it’s important not to lose sight of the gains, and also important to celebrate the good news despite the bad.

Cassava leaf waving woes away

Our balanced but upbeat cassava tale today has deep roots in the past. Check this out in these links:

Nov 202013
 
Chiedozie Egesi

Chiedozie Egesi

Despite the social injustice around me, I always thought there was opportunity to improve people’s lives…GCP helped us to build an image for ourselves in Nigeria and in Africa, and this created a confidence in other global actors, who, on seeing our ability to deliver results, are choosing to invest in us.”
 
– Chiedozie Egesi, a would-have-been surgeon who switched sides to biology and crop genetics, and who got acquainted with GCP through the Internet.

Backdrop: A booming economy and a wealth of natural resources may be among some of the common preconceptions of the average Jane and Joe regarding Africa’s most populous nation. Lamentably, however, Nigeria, like numerous robust economies worldwide, is still finding its feet in addressing severe inequality and ensuring that the nation’s wealth also flows to the poorest and most marginalised communities.

It’s a problem Chiedozie Egesi (pictured above), a molecular plant breeder at Nigeria’s National Root Crops Research Institute (NRCRI), understands well: “Nigeria is an oil-producing country, but you still see grinding poverty in some cases. Coming from a small town in the Southeast of the country, I grew up in an environment where you see people who are struggling, weak from disease, poor, and with no opportunities to send their children to school,” he reveals. The poverty challenge, he explains, hits smallholder farmers particularly hard: “Urban ‘development’ caught up with them in the end: some of them don’t even have access to the land that they inherited, so they’re forced to farm along the street.”

Maturing cassava fruits.

Food first! A man with a mission and fire in his belly, determined to make a difference
For this gifted and socially conscious young man, however, the seemingly bleak picture only served to ignite a fierce determination and motivation to act: “Despite the social injustice around me, I always thought there was opportunity to improve people’s lives.” And thus, galvanised by the plight of the Nigerian smallholder, plans for a career in medical surgery were promptly shelved, and traded for biological sciences and a PhD in crop genetics, a course he interspersed with training stints at USA’s Cornell University and the University of Washington, Seattle, along the way, before returning to the motherland to accept a job as head of the cassava breeding team, and – following a promotion in 2010 – Assistant Director of the Biotechnology Department, at NRCRI.

As evident from the burgeoning treasure chest of research gems to his name, it was a professional detour which paid off, and which continues to bear fruit today.

Making a marked difference, cultivating new partnerships, and looking beyond subsistence
In 2010, work by Chiedozie and his NRCRI team resulted in the official release of Africa’s first molecular-bred cassava variety which was both disease-resistant and highly nutritious – an act they followed in 2012 with the release of a high-starch molecular-bred variety. The team’s astute navigation of molecular markers resulted in breeding Latin American cassava varieties resistant to cassava mosaic disease (CMD), leading to the release of CMD-resistant cassava varieties in the African continent for the first time. Genetic maps intended to enhance breeding accuracy for cassava – the first of their kind for the crop in Africa – have been produced, and quantitative trait loci (QTLs) for cassava breeding are in the making. In 2011, the team, together with their partners at the International Institute of Tropical Agriculture (IITA) and HarvestPlus (a CGIAR Challenge Programme), released three pro-vitamin A-rich varieties of cassava, which hold the potential to provide children under five and women of reproductive age with up to 25 percent of their daily vitamin A allowance – a figure Chiedozie and his team are now ambitiously striving to increase to 50 percent.

These new and improved varieties – all generated as a direct or indirect result of his engagement in GCP projects – are, Chiedozie says, worth their weight in gold: “Through these materials, people’s livelihoods can be improved. The food people grow should be nutritious, resistant and high-yielding enough to allow them sell some of it and make money for other things in life, such as building a house, getting a motorbike, or sending their kids to school.”

Prior to my GCP work, I was more or less a plant breeder, and a conventional one at that. Whilst I’d been exposed to molecular tools during my early work on yam and other crops, I was not applying them in my work back then…GCP was not only there to provide technology but also to guide you in how to operate that technology… Now all our staff understand what is meant by good breeding, data analysis or applying genotypic data. My whole team benefitted.”

A chance ‘meeting’, with momentous manifold connections
Having first stumbled across the GCP website by chance when casually surfing the internet one day in a cyber café back in 2004, Chiedozie’s attention was caught by an announcement for a plant breeders’ training course in South Africa, an opportunity which he applied for on the off chance…and for which, hey presto!, he was accepted! Thus, his GCP ‘adventure’ began!

Chiedozie Egesi (left) and Emmanuel Okogbenin (right) in a cassava field.

Chiedozie Egesi (left) and Emmanuel Okogbenin (right) in a cassava field.

Promptly revealing an exceptional craftsmanship for all things cassava, Chiedozie soon became engaged in subsequent opportunities, including a one-year GCP fellowship at the International Centre for Tropical Agriculture (CIAT) in Colombia, a number of GCP Capacity building à la carte-facilitated projects, and, more recently, a major role as a Principal Investigator in the GCP Cassava Research Initiative (RI), teaming up with NRCRI colleague and Cassava RI Product Delivery Coordinator, Emmanuel Okogbenin. The Cassava RI is where Chiedozie’s energies are primarily invested at present, with improving and deploying markers for biotic stresses in cassava being the name of the game.

The significance of his GCP engagements was, Chiedozie affirms, momentous: “Prior to my GCP work, I was more or less a plant breeder, and a conventional one at that. Whilst I’d been exposed to molecular tools during my early work on yam and other crops, I was not applying them in my work back then.”

Collaboration in a GCP-funded project with CIAT led to the development of a new laboratory space for NRCRI, bolstered by support for basic materials as well as training. “GCP was not only there to provide technology but also to guide you in how to operate that technology,” Chiedozie comments. (For more on how it all began, see At home and to go and Molecular bonds in pp 26–29 in this e-book)

GCP’s Integrated Breeding Platform (IBP), he says, has played a vital role in this regard: “By opening the door to training, generation of data, analysis of data, and by giving support in making decisions, GCP’s IBP serves as a one-stop shop for cassava breeding.” It’s a sentiment shared by his NRCRI colleagues, he says: “GCP is providing a comprehensive full-package deal. Besides myself, several colleagues have been trained at NRCRI. Now all our staff understand what is meant by good breeding, data analysis or applying genotypic data. My whole team benefitted.”

A real deal-breaker is the facilitation of self-empowerment amongst national programmes, and the new avenues unfolding for enhanced collaboration at the local, national and regional level…What we’re seeing is a paradigm shift. In the past there was a general belief that this kind of advanced molecular science was only feasible in the hands of CGIAR Centres or developed-country research institutes – the developing-country programmes were never taken seriously. When the GCP opportunity to change this came up we seized it, and now the developing-country programmes have the boldness and capacity to do molecular breeding and accurate phenotyping for themselves.”

Growth in numbers, capital, capacity, collaboration, reach and impact
Strength in numbers, Chiedozie says, is a vital lifeline for cassava, a crop which has suffered years of financial neglect. As such, a real deal-breaker in Chiedozie’s eyes is the facilitation of self-empowerment amongst national programmes, and the new avenues unfolding, thanks to his involvement in the GCP cassava breeding Community of Practice (CoP), for enhanced collaboration at the local, national and regional level: “We now have a network of cassava breeders that you can count on and relate with in different countries. This has really widened our horizons and also made work more visible,” he offers, citing effective links formed with Ghana, Sierra Leone, Liberia, Mozambique, Malawi and Côte d’Ivoire, amongst several other cassava-breeding neighbours near and far.

Cassava leaf

Cassava leaf

The achievements amongst this mushrooming community are, he stresses, unprecedented: “Participation in the CoP means many countries can now create their own hybrids and carry out their own selection, which they could not do before,” he affirms.

And it’s a milestone Chiedozie and colleagues are justifiably proud of: “What we’re seeing is a paradigm shift. In the past there was a general belief that this kind of advanced molecular science was only feasible in the hands of CGIAR Centres or developed-country research institutes – the developing-country programmes were never taken seriously. When the GCP opportunity to change this came up we seized it, and now the developing-country programmes have the boldness and capacity to do molecular breeding and accurate phenotyping for themselves,” Chiedozie confirms.

GCP helped us to build an image for ourselves in Nigeria and in Africa, and this created a confidence in other global actors, who, on seeing our ability to deliver results, are choosing to invest in us.” 

Building on success, going from strength to strength as the sands shift

With internal capacity now blossoming of its own accord – in no small measure due to the leading role played by NRCRI in the sensitisation of cassava plant breeders throughout Nigeria and beyond – the sands are certainly shifting: “GCP helped us to build an image for ourselves in Nigeria and in Africa, and this created a confidence in other global actors, who, on seeing our ability to deliver results, are choosing to invest in us.”

Anthony Pariyo (left) of NaCRRI, Uganda

Visitors with working clothes on: NaCRRI Uganda’s Anthony Pariyo (left) and Williams Esuma (right) visiting NRCRI Umudike on a breeder-to-breeder visit in July 2012. Williams’ postgraduate studies were funded by GCP through the cassava CoP.

And the beauty of it, Chiedozie continues, is that the cassava crew is going from strength to strength: “Nigeria is seen as a really strong cassava-breeding team, not only within Africa but also globally. And we have not yet realised all the benefits and potential – these are still unfolding,” he enthuses.

Also yet to unfold are Chiedozie’s upcoming professional plans, which, he reveals, will soon see him engaging with the USA’s Cornell University, the Bill & Melinda Gates Foundation, the International Institute of Tropical Agriculture (IITA) and Uganda’s National Crop Resources Research Institute (NaCRRI) in an initiative which, through its focus on genomic selection in cassava breeding, promises to be, Chiedozie reveals, “at the frontier of cutting-edge technology.” Genomic selection for this initiative is already underway.

Readers intrigued by this tantalising taster of what to expect in Chiedozie’s next professional chapter are encouraged to watch this space over the coming years…Judging by his remarkable research record to date, we feel confident that future installments will not disappoint!

Meantime, here’s Chiedozie’s presentation at the GCP General Research Meeting in September 2013. We are also working on videos of Chiedozie and his work. Yet more reason to watch this space!

Links
  • For a picture of Chiedozie’s work near the beginning in 2006, see pp 26–29 here (At home and to go and Molecular bonds)
  • More recent updates are on the Cassava InfoCentre

 

Nov 122013
 

 

 

Participants at the 2013 GRM. High-resolution version on Flickr: http://bit.ly/1fxhkmQ

Participants at the 2013 GRM. High-resolution version on our Flickr account.

The General Research Meeting (GRM) is by far the largest and most important event on our calendar. This year’s GRM was held on September 27‒30 2013, with 135 people from 35 countries attending (see list).

Various presentations were made on progress and next steps on research in GCP projects, including for GCP’s Integrated Breeding Platform (IBP). Focus was on GCP’s nine focus crops in Phase II – beans, cassava, chickpeas, cowpeas, groundnuts, maize, rice, sorghum and wheat, with the poster sessions adding a couple more (see ‘sixty posters’ below). You can view the presentations made on our website  (to see them in the context of the overall agenda), or on SlideShare (all gathered in one place).  We have uploaded all but one presentation, where we’re still waiting for the presenter’s permission to publish. A comprehensive update on all GCP projects is here (PDF). The meeting was a blend of plenary sessions on core topics and research updates, and ‘drill-down’ breakouts on crops, data management and capacity building (the last two, in the context of IBP’s proposed Phase II, which had its own dedicated one-day stakeholder meeting after GRM, on 1st October).DSC07162_w

Social were we…but we also did some heavy lifting
We didn’t just talk to ourselves: we made a bit of noise on social media to also bring in other voices into the GRM discourse and chit-chat, using the hashtag #GRM13, creating a good buzz of conversations. Also linking in to GRM were our LinkedIn followers. And neither was it all business, science and rigid structure: there was free-flow too, with an open afternoon where participants could take a relaxing break, organise their own meetings, or take a tour to Lisbon. Some of the scenes from the tour are posted on Flickr, as are other snapshots from the meeting. We’ve since gathered up some of the social media posts on Storify.

GRM was far from its grim-sounding  abbreviation and hashtag on social media:  exemplifying the best of the ‘GCP spirit’,  the sessions were engaging, relaxed, conversational and spiced with humour and a light touch, despite the ‘heavy’ topics under discussion (see agenda). But the topic at hand was grim, since the situation is dire – drought affects almost all crops and all regions worldwide. As drought tolerance is our key focus since inception, most of the discussions naturally centred on this topic. Equally important is the scourge wrought by pests and disease, which afflict some crops more than others. For example, under most circumstance, cassava is naturally very drought-tolerant, but what good will this do if cassava survives drought only to succumb to the deadly pests and diseases that stalk this drought champion?

Sunset and ‘moon-rise’
GRM was also a time for both stocktaking and mapping the future  given GCP’s sunset in 2014.  A central and recurring theme was GCP’s transition strategy, and how – and where – to embed GCP-initiated projects that will extend beyond the Programme’s lifetime. For this, the CGIAR Research Programs (CRPs) are a natural first choice. GRM enjoyed a very good representation of the CRPs, with all six crop CRPs represented, some at the highest level.

A few members of our Executive Board also attended. Board Chair, Andrew Bennett, set the right tone for the meeting. In his remarks at the opening session, he emphasised that this was not a time for sadness, swan songs and moping as GCP approaches sunset.  Rather, it was a time to appreciate the beauty of sunsets, in the sure knowledge that sunsets give rise to  moon-rise!

A section of Poster Session II presenters. IN the foreground, Andrew Bennett, Chair, GCP Excecutive Board.

A section of Poster Session II presenters. In the foreground, Andrew Bennett, Chair, GCP Executive Board.

“Say it succinctly in sixty seconds!”
The poster session was as lively as always, with a record of… (hold your breath!) 60 posters presented, surpassing the previous GRM in 2011 which attracted 53 posters.

Perfection!  Sixty posters for sixty seconds
Sixty was a PERFECT number for the 60-second sizzle, where each poster presenter had a maximum of 60 seconds (and not a second more!) to present at plenary, devising whichever means necessary to attract the audience to their poster. It was easy to discern the brash ‘old hands’ who had perfected their art after several GRMs; the tricksters and various reincarnations of The Artful Dodger amongst them, trying to beat the clock; new and slightly jittery presenters who were more than just a little bewildered but still proved their mettle; and the new, sassy and confident. This beautiful blend apart, the poster session brought in not only new faces to add to the familiar ones, but also refreshing new tastes to diversify and sweeten our Staple of Nine crops. To our diet of cereals, legumes and tubers, poster presenters from The Philippines added eggplants, rounded off with bananas for dessert.

"Definitely time for dessert, and do not disturb!" they seem to be saying. Jean-Christophe Glaszmann (left) and Hei Leung (right), who played ace roles on a multi-partner GCP project on bananas.

“Definitely time for dessert, and do not disturb!” they seem to be saying. Jean-Christophe Glaszmann (left) and Hei Leung (right), who played ace roles on a multi-partner GCP project on bananas.

♫ Welcome to the Hotel California! ♫…
As always, GRM was a mingling of old and new friends, a time for some paths to meet and for new forks to branch out, a season to reflectively look back and progressively face forwards. In keeping with Andrew’s continuity of sunsets giving way to moonrise, we said a group goodbye to Rajeev Varshney, former Genomics Theme Leader, who left the GCP Management Team in August. And we were happy to once again welcome, embrace and recognise two old friends – Jean Christophe Glaszmann (CIRAD) and Hei Leung (IRRI), who were, respectively ex-Subprogramme Leaders for genetic diversity and genomics in GCP Phase I, and continue to be involved with GCP as researchers, as will Rajeev.

In this picture, we caught up with them at a very appropriate moment: dessert during the Gala Dinner. Take it from us, these two guys are well versed in matters dessert, with a dash of science, as this blast from the past on bananas attests, also summarised in a Facebook photo-story here.

We are indeed a Hotel California of sorts – always open for check-in and checkout. As for leaving…we’re still working on the modalities of that!

And despite the fond farewell, truth is Rajeev is not going anywhere either, as far as GCP is concerned. You only needed to have been at GRM or following the conversations on Facebook and Twitter, especially the photos, to witness this. He was (delightfully!) all over the place, passing on his ‘positive epidemic’ of highly infectious enthusiasm and incredible energy. Here he is in action at the Gala Dinner in the photos below, which really need no caption. We’re sure you’ll be able to easily spot Rajeev, ‘high-fivin’ and ‘rapping’, eclipsing the GCP Director, who however appears quite pleased in his lower perch with Rajeev on the platform. But if you’re truly lost and can’t spot the super-charged high-energy guy in the photos, no worries! Here are some handy clues.

OLYMPUS DIGITAL CAMERAOLYMPUS DIGITAL CAMERA

In distinguished company
Rajeev’s energy goes beyond GRM and GCP; this year as in previous ones, he received several awards, among them, the Young Crop Scientist Award by Crop Science Society of America, and the Illumina Agriculture Greater Good Initiative Award.

Hari Upadhyaya

Hari Upadhyaya

Prior to these recognitions during the Gala Dinner, Jean-Marcel formally honoured ICRISAT’s Hari Upadhyaya (pictured) during plenary for two awards Hari had received in the course of the year, also from the Crop Science Society of America. These awards were for Hari’s notable contributions – at international level – to crop science, and to plant genetic resources.

Hari is a long-term GCP Principal Investigator, working primarily on sorghum. But that is not the only crop he works on. Hari was the lead author of the joint chickpea and pigeonpea chapter in our book on drought phenotyping.

Evaluation
Unlike other GRMs where we’ve requested participants to evaluate the meeting, we did not do so this year, since this is very likely the last meeting of its kind, and the goal of the evaluation is to use participant feedback to improve future meetings. With the help of our participants, we’ve applied the lessons we’ve learnt from them through the years to arrive at what we believe to be a winning combination, balancing the diverse interests of our participants for overall improvement of their GRM experience.

 

 

 

 

 

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